LAST CHANGED    : 2023/12/22
CRUISE NAME(S)  : FKt230918
CRUISE DATES    : 2023/09/18 to 2023/09/22
SHIP NAME       : Falkor (too)
PORTS           : Puerto Ayora, Galapagos, Ecuador to Golfito, Costa Rica
CHIEF SCIENTIST : Katleen Robert
DATABASE NAME   : a_ftoo
DATA FILES      : ftoo2023_260_07041.raw to ftoo2023_263_79200.raw

STATUS          :  to do                           done
                  ------                       -----------
                  averaged                       [ X ] at sea
                  loaded                         [ X ] at sea

                  NOTE: heading correction instrument exists
                        NOTE: time-dependent heading corrections
                        applied IN the ensembles
                        (see   cal/rotate/ens_hcorr.ang)

                  check heading correction       [ X ]
                  calibration                    [ X ]
                  edited                         [ X ]
                  re-check heading correction    [ X ]
                  check editing                  [ X ]
                  figures                        [ X ]

INSTRUMENT      : os38

ACQUISITION     :
     PROGRAM    : uhdas
     PROCESSING : python

LOGGING         :

     PARAMETERS : BT : bottom track mode (on or off)
                  SI : sampling interval or averaging period for ensemble (sec)
                  NB : number of bins
                  BL : bin length (m)
                  TD : transducer depth (m)
                  BK : blanking length (m)
                  HO : heading offset applied by DAS (deg)
                  HB : heading bias (deg)
                  CRPH : compensation for roll-pitch-heading, 1:on, 0:off)

                  yy/mm/dd  hh:mm:ss   BT   SI  NB  BL  TD BK     HO     HB CRPH
                  2023/09/18 02:02:28  off  300  75  24   7 16   0.21   0.00 0001

HEADING         :
     PRIMARY    : heading from gyro1
     CORRECTION : heading correction from seapath
                        NOTE: time-dependent heading corrections
                        applied IN the ensembles
                        (see   cal/rotate/ens_hcorr.ang)

POSITIONS       : gps positions from posmv_gps

CALIBRATION     : (check original processing parameters)
                  (1) transducer alignment
                      original transducer alignment: 0.21
                      additional rotation 0
                      final transducer angle is: 0.21

                  (2) scale factor
                      original scale factor 1
                      additional scale factor (none)

                  (3) ADCP (dx=starboard, dy=fwd) meters from GPS
                    original:        xducer_dx=0          xducer_dy=-10
                    correction           0                 0
                    final offset         0                -10

COMMENTS        : Data below the bottom was removed, as well as small bits of
                  data at the the bottom of the sonars range was
                  removed.  For this cruise, there was no need to
                  perform any additional calibrations.

PROCESSOR       : Jamie Ash

--- final processing parameters from dbinfo.txt ----------

## (determined from "sonar"): model = os
## (determined from "sonar"): frequency = 38
## (determined from "sonar"): instname = os38
## (determined from "sonar"): pingtype = nb
           beamangle   30
          cruisename   FKt230918
            datatype   uhdas
              dbname   a_ftoo
             ens_len   300
             fixfile   a_ftoo.gps
           frequency   38
          hcorr_inst   seapath
            instname   os38
               model   os
            pingtype   nb
         proc_engine   python
          ref_method   refsm
     refuv_smoothwin   3
        refuv_source   nav
               sonar   os38nb
            txy_file   a_ftoo.agt
           xducer_dx   1
           xducer_dy   -10
            yearbase   2023

==================================================
POST PROCESSING STEPS:
==================================================

------------------------------------------------------------------------------
### 1. Check visual oddities
------------------------------------------------------------------------------

# To generate the figures for figview.py I ran this.
quick_adcp.py --steps2rerun navsteps:calib --auto

# I ran this to look for gaps in the cruise track.
plot_nav.py nav/a*.gps

figview.py
dataviewer.py
catwt.py
catxy.py

   **watertrack**
-----------
Number of edited points:  16 out of  20

            median     mean      std
amplitude   1.0060   1.0033   0.0101
phase       0.0665   0.1317   0.3471
-----------

**transducer-gps offset**
-----------
guessing ADCP (dx=starboard, dy=fwd) meters from GPS
positions from a_ftoo.agt
calculation done at 2023/12/06 23:18:01
xducer_dx = -1.499353
xducer_dy = 2.760798
signal = 754.114110
-----------

# Gaps in the heading correction exist and patch_hcorr.py was needed.
# I ran this to interpolate for missing heading correction fixes:
cd cal/rotate
patch_hcorr.py
cd ../..

------------------------------------------------------------------------------
### 2. ADCP calibration
------------------------------------------------------------------------------

# Not needed here. Calibrations from earlier cruises with better
# statistics were entered into the UHDAS processing at sea.

------------------------------------------------------------------------------
### 3. Editing points
------------------------------------------------------------------------------

# To go through the dataset and edit out bad values I ran

dataviewer.py -e

# To recompute the calibration residuals I ran

quick_adcp.py --steps2rerun navsteps:calib --auto

------------------------------------------------------------------------------
### 4. Check edited, calibrated dataset against original dataset
------------------------------------------------------------------------------

### Run this: (Has this corrected the problems in the original?)
dataviewer.py -c . ../os38nb

### Run this to compare this sonar with another sonar (after both are finished)
dataviewer.py -c ../wh300.cal .

------------------------------------------------------------------------------
### 5. Make plots and files
------------------------------------------------------------------------------

# I ran this to divvy up the cruise sections.
cp ../wh300/webpy/sectinfo.txt ./webpy/
quick_web.py --redo

# I ran this to extract matlab files.
quick_adcp.py --steps2rerun matfiles --auto

# I ran this to extract a netCDF file.
adcp_nc.py adcpdb contour/os38nb  FKt230918 os38nb --ship_name "Falkor (too)"

# I ran this to look at the headers.
ncdump -h contour/os38nb.nc | egrep '(cruise_id|sonar|yearbase)'