SHIP NAME       : Roger Revelle 
LAST CHANGED    : Tue May 29 10:07:21 HST 2007

CRUISE          : I8S (knox03rr)
CRUISE DATES    : 2007/02/04 to 2007/03/17
PORTS           : Dunedin, NZ to Pert, Australia
CHIEF SCIENTIST : Jim Swift
DB_NAME         : a_rr
DATA FILES      : uhdas raw logging
STATUS          : loaded, edited, heading corrected, done.. ready to release to JASADCP

INSTRUMENT      : NB150


ACQUISITION
     PROGRAM    : UHDAS

     PING TYPE  : narrowband

      PARAMS    : blank=            4  (BK) (see adcpdb/*cnh after first pass)
                  pulse =           8  (PL)
                  bin length=       8  (BL)
                  number of bins=  50  (NB)
HEADING
     PRIMARY    : gyro
     CORRECTION : ashtech

POSITIONS       : GP90

CALIBRATION     : amp = .9777 (during acquisition)
                : original heading alignment: 2.09 degrees

COMMENTS        : several ashtech gaps.
                : bad weather in the beginning rendered most underway data useless
                : data coverage 200-350m

PROCESSORS:     : Jules Hummon



--------------------------------------------

Speed of sound was calculated using 35PSU and thermistor temperature
Incremental processing at sea was done using UHDAS+CODAS processing
This release was  reprocessedfrom scratch (as opposed to using the
database and processing directory from the ship).  The data were processed
at sea, 2 days out of port.  The last 2 days of processing were added
before release of the data.

--------------------------------------------

(0) Edit config/KNOX03RR*.m to point to the right uhdas directory

(1) make a new processing directory

 adcptree.py  nb150 --instclass nb --instname nb150 \
  --pingtype nb   --datatype uhdas --configbase KNOX03RR --configpath config



(2) fill qquick_adcp.py control file

cat << EOF > nb150/q_py.cnt
###
--yearbase    2007
--pingtype    nb
--cfgbase     KNOX03RR
--cruisename  KNOX03RR
--instclass   nb
--instname    nb150
--dbname      a_rr
--datatype    uhdas
--datadir     /media/clivar/proc/knox03rr/nb150/data
--cfgpath     /media/clivar/proc/knox03rr/nb150/data/raw/nb150
--ens_len     300
--delblks     1
--ping_headcorr
--hcorr_inst  ashtech
--use_topo4edit
--use_refsm
# --find_pflags
#--use_matplotlib
--firstdepth  35
--auto
EOF

(3) initial run (single-ping editing and averaging)

quick_adcp.py --cntfile q_py.cnt


(4) rotation


Need to "unrotate" to fix the ashtech gaps.

 ERROR: Misalignment parameters in ancillary_2
        structure are improperly initialized
% DATABASE: Closed successfully



Can't "unrotate" but can rotate by -dh

cal/rotate
fix_heading.m                save negdh.asc and newdh.asc
rotate rotate_backwards.tmp
rotate rotate1.tmp

cd ../..
quick_adcp.py --yearbase 2007 --use_refsm --steps2rerun  navsteps:calib --auto


watertrack
----------------

Number of edited points: 175 out of 188
   amp   = 0.9980  + 0.0000 (t -  57.7)
   phase =   0.30  + -0.0031 (t -  57.7)
            median     mean      std
amplitude   0.9980   0.9980   0.0069
phase       0.3370   0.3011   0.5356


bottom track
--------------
unedited: 226 points
edited:   193 points, 2.0 min speed, 2.5 max dev
            median     mean      std
amplitude   0.9972   0.9970   0.0028
phase       0.2431   0.2552   0.3222

------------------------

fix with
phase=.30

quick_adcp.py --yearbase 2007 --use_refsm --steps2rerun  rotate:navsteps:calib --auto --rotate_angle 0.3


watertrack:

Number of edited points: 175 out of 188
   amp   = 0.9980  + 0.0000 (t -  57.7)
   phase =   0.00  + -0.0032 (t -  57.7)
            median     mean      std
amplitude   0.9980   0.9980   0.0069
phase       0.0410   0.0010   0.5360
------------------------
(4a)

OOps -- this processing was done while at sea, 2 days before we got to port.
I need to add the last 2 days and rotate by 0.3 for just that last section

- change paths in config/KNOX03RR_cfg.m
- change paths in q_py.cnt
- rerun quick_adcp.py --cntfile q_py.cnt
- rotate just the last segment by 0.3
  time range is 2007/03/14  12:09:34 to 2007/03/16  23:08:40

  cal/rotate:   "rotate rotate2.tmp"

=======================


now edit

quick_adcp.py --yearbase 2007 --use_refsm --steps2rerun  apply_edit:navsteps:calib --auto

====================

**watertrack**

Number of edited points: 160 out of 181
   amp   = 0.9979  + 0.0000 (t -  57.6)
   phase =  -0.00  + 0.0000 (t -  57.6)
            median     mean      std
amplitude   0.9975   0.9979   0.0068
phase       0.0410  -0.0016   0.4733