mkdir vmdas_project_dir
cd vmdas_project_dir
# link data here
vmdas_info.py --logfile lta_info.txt os data/*LTA
adcptree.py os75bb_lta --datatype lta
cd os75bb_lta
cat << EOF > q_py.cnt
##### q_py.cnt is
### python processing
--yearbase 2009 ## required, for decimal day conversion
## (year of first data)
--cruisename ps0918 ## always required; used for titles
--dbname aship ## database name; in adcpdb. eg. a0918
--datatype lta ## datafile type
--sonar os75bb ## instrument letters, frequency, [ping]
--ens_len 300 ## specify correct ensemble length
--pgmin 30
--datadir ../data ## copying or linking files
#### end of q_py.cnt
EOF
quick_adcp.py --cntfile q_py.cnt --auto
cd ..
============================================
vmdas_info.py --logfile enr_info.txt os data/*ENR
mkdir config
reform_vmdas.py ../data
# reform_defs.py (will be used in step 4)
# vmdas2uhdas.py (transform vmdas data into uhdas dasta)
python3 vmdas2uhdas.py
uhdas_proc_gen.py -s sos
mv sos_proc.py ps0918_proc.py
cd ..
adcptree.py os75bb --datatype uhdas --cruisename ps0918
cd os75bb
cat << EOF > q_py.cnt
### q_py.cnt is
## python processing
--yearbase 2009 ## required, for decimal day conversion
## (year of first data)
--cruisename ps0918 ## *must* match prefix in config dir
--dbname aship ## database name; in adcpdb. eg. a0918
--datatype uhdas ## datafile type
--sonar os75bb ## specify instrument letters, frequency,
## (and ping type for ocean surveyors)
--ens_len 300 ## averages of 300sec duration
--update_gbin ## required for this kind of processing
--configtype python ## file used in config/ dirctory is python
--ping_headcorr ## ps0918_proc.py says use HDT first,
## correct to ashtech
--max_search_depth 1500 ## use topography for editing?
## 0 = "always use amplitude to guess the bottom;
## flag data below the bottom as bad
## -1 = "never search for the bottom"
## positive integer: use ADCP amp to autodetect
## the bottom. Only do this in "deep water",
## i.e. topo says bottom is deeper than this
EOF
quick_adcp.py --cntfile q_py.cnt --auto
